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中國精品科技期刊2020
劉珊,蔣楊丹,顏佶沙,等. 蠟樣芽孢桿菌GW-01全基因組測序及生物學特性分析[J]. 食品工業科技,2024,45(7):167?176. doi: 10.13386/j.issn1002-0306.2023060031.
引用本文: 劉珊,蔣楊丹,顏佶沙,等. 蠟樣芽孢桿菌GW-01全基因組測序及生物學特性分析[J]. 食品工業科技,2024,45(7):167?176. doi: 10.13386/j.issn1002-0306.2023060031.
LIU Shan, JIANG Yangdan, YAN Jisha, et al. Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01[J]. Science and Technology of Food Industry, 2024, 45(7): 167?176. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2023060031.
Citation: LIU Shan, JIANG Yangdan, YAN Jisha, et al. Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01[J]. Science and Technology of Food Industry, 2024, 45(7): 167?176. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2023060031.

蠟樣芽孢桿菌GW-01全基因組測序及生物學特性分析

Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01

  • 摘要: 目的:通過全基因組測序和生物信息學,研究前期篩選可降解高效氯氰菊酯(β-CY)蠟樣芽孢桿菌GW-01的基因組序列信息和生物學特性,為其安全性評估提供參考。方法:利用HPLC驗證了GW-01降解β-CY的能力。GW-01的整個基因組基于二代Illumina NovaSeq與三代PacBio Sequel測序平臺相結合的測序技術,對菌株GW-01進行全基因組測序,并對測序數據進行基因組組裝、基因預測與功能注釋、碳水化合物活性酶預測、毒力因子和抗生素抗性分析,此外,還基于gyrA 基因序列對菌株GW-01構建系統發育樹。結果:GW-01在第6 d可降解48.4%的β-CY;GW-01菌株全基因組大小為5244145 bp,基因組類型為環狀,平均GC含量36.43%,共編碼5314個基因,含有104個tRNA基因,313個ncRNA,GW-01菌株全基因組序列在GO、KEGG、COG、NR和 Swiss-Prot、CAZy、VFDB、CARD數據庫分別注釋到基因3536、4714、4434、5290、3854、135、263和96個,GW-01與其他四個近緣菌株相比顯示出高GC含量,并且毒力因子和耐藥基因較少。結論:GW-01與其近緣菌相比,顯示出明顯不同的進化途徑和毒素編碼基因,表明其安全性較高。

     

    Abstract: Objective: To analyze the genome sequence information and biological properties of the pre-screened high-performance cypermethrin (β-CY)-degrading Bacillus cereus strain GW-01 through whole genome sequencing and bioinformatics, and to provide valuable insights for its safety assessment. Methods: The degradation ability of GW-01 towards β-CY was verified using HPLC. The whole genome of strain GW-01 was sequenced using third-generation single-molecule sequencing technology based on the second-generation Illumina NovaSeq and third-generation PacBio Sequel sequencing platforms. The sequencing data underwent analyses for genome assembly, gene prediction, functional annotation, prediction of carbohydrate-activating enzymes, virulence factors, and antibiotic resistance. Additionally, a phylogenetic tree was constructed for strain GW-01 based on the gyrA gene sequence. Results: On day 6, GW-01 degraded 48.4% of β-CY. The whole genome size of GW-01 strain was 5244145 bp with a cyclic genome type and an average GC content of 36.43%. It encoded a total of 5314 genes, including 104 tRNA genes and 313 ncRNAs. The whole genome sequences of GW-01 were annotated in the GO, KEGG, COG, NR, Swiss-Prot, CAZy, VFDB, and CARD databases, yielding 3536, 4714, 4434, 5290, 3854, 135, 263 and 96 annotated genes, respectively. GW-01 exhibited higher GC content and fewer virulence factors and resistance genes compared to the other four closely related strains. Conclusion: GW-01 displayed a distinct evolutionary pathway and a lower number of toxin-encoding genes compared to common Bacillus cereus strains, suggesting its higher safety profile.

     

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